PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4872_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 697aa    MW: 76140.9 Da    PI: 6.9413
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4872_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06299319526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+++++ G C++Gd C +aHg
  Neem_4872_f_1 299 PCPDHRK-GACSRGDMCEYAHG 319
                    8******.*************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.201.3E-1638170IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.39E-1584170IPR020683Ankyrin repeat-containing domain
SMARTSM002480.2886116IPR002110Ankyrin repeat
PfamPF127961.8E-986155IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.2186193IPR020683Ankyrin repeat-containing domain
CDDcd002041.48E-1388168No hitNo description
SMARTSM002480.0023121153IPR002110Ankyrin repeat
PROSITE profilePS5008812.102121156IPR002110Ankyrin repeat
SMARTSM003561.9E-4294320IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.69299321IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4326357IPR000571Zinc finger, CCCH-type
SMARTSM0035662329352IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MCGGSEKLSS NTLATSSSPQ SKSSPDRNMS NLNEMVKTEH SFSPLLELAA DNDVEGFKKS  60
VCDASAISEV GLWYCCQRLS KKIVLKCRTP LMVAAEYGSV DFVKLTLSLS KTDVNLSCGM  120
DKSTALHCAA SGGSVKAVDV VKLLLLAGAD PNTTDANGHC PFDVIVAHPD VPDLRVALQE  180
LLKNDGSLCS DDLQVTSVGL RFSSSRSSSS DDYSLSSVQC KSDDVPASSV PEKKEYPIDP  240
SLPDIQNSMY TSDEFRMFSF KIRPCSRAYS HDWTECPFAH PGENAKRRDP RKFHYSCVPC  300
PDHRKGACSR GDMCEYAHGI FESWLHPAQY KTRLCKDGTS CLRQVCFFAH TSDELRPLYA  360
STGSGVPSPR SATAMNLMPV SPSSVSAMSP FPYTPPMSPS NDILHSSMAW PQQSIPTLQL  420
PPGNIQASRL RSSLNARNIP AEELNMLQDF EMQQQQLINE SLSRPQFGTS SANFSAHSNT  480
LTPIKLSYAE ILSPRYSDHF AASTVLSPSH KSVVLNQLQQ QEKMLSPIKT NVFPPKNLDH  540
SLLQASFGIS SPRGISPRKV DPISPMSSRR AALAQREKLL QQLCNLSCDL KSDSAIGSPV  600
NSWSKLESSG RKVDWSIQVD ELNRLRKSYS LGLNGEGPDV SSVQSLARET PRIKETTTVP  660
PSRMSFAADG SNLNPESESG DHLGAWIEQL QLDQIVA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446118.10.0hypothetical protein CICLE_v10014437mg
RefseqXP_006446119.10.0hypothetical protein CICLE_v10014437mg
RefseqXP_006446120.10.0hypothetical protein CICLE_v10014437mg
RefseqXP_006470610.10.0PREDICTED: zinc finger CCCH domain-containing protein 56 isoform X1
RefseqXP_006470611.10.0PREDICTED: zinc finger CCCH domain-containing protein 56 isoform X1
RefseqXP_006470612.10.0PREDICTED: zinc finger CCCH domain-containing protein 56 isoform X1
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A067FDI90.0A0A067FDI9_CITSI; Uncharacterized protein
STRINGVIT_06s0004g02160.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain